PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 243aa    MW: 27450.4 Da    PI: 8.5641
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002293115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_016477028.1  93 FECQYCFKQFANSQALGGHQNAH 115
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-691120No hitNo description
Gene3DG3DSA:3.30.160.609.2E-591119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42793120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAKDVSSTFH SPLSNNGENY ESSSKSCVEN KRLKLFGFEL DPSPKIQKKS KEDQGDHESV  60
NSSSASTVSS GRDQEKLIAS NGKPDHEEIM KKFECQYCFK QFANSQALGG HQNAHKKERM  120
RKKRLQLQAR KASLSCYLQP FQNSNNNINY QFYDPNSFFG NSDQFTVYDE SQISFSPYDQ  180
ESQVLAGKWP FQQDSCTFTL THGERSRGNY NKPAEVMNSA TLPNSASKQK CKSLDLQLGL  240
GLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477028.10.0PREDICTED: zinc finger protein 5-like
TrEMBLK4BWF82e-72K4BWF8_SOLLC; Uncharacterized protein
STRINGSolyc05g006310.1.15e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-17zinc finger protein 5